
20th International Conference on Computational Methods in Systems Biology (CMSB 2022)
September 14-16, 2022, Bucharest, Romania
Accepted papers
Regular papers
- Svitlana Braichenko, Ramon Grima and Guido Sanguinetti. Bayesian learning of effective chemical master equations in crowded intracellular conditions.
- Aurélien Desoeuvres, Peter Szmolyan and Ovidiu Radulescu. Qualitative dynamics of chemical reaction networks: an investigation using partial tropical equilibrations.
- Greugny Eléa, Stamatas Georgios and François Fages. Stability versus Metastability in a Model of Skin Microbiome.
- Martin Helfrich, Milan Ceska, Jan Kretinsky and Štefan Martiček. Abstraction-Based Segmental Simulation of Chemical Reaction Networks.
- Mathieu Hemery and François Fages. Algebraic Biochemistry: a Framework for On-line Analog Computation in Cells.
- Antonio Jiménez-Pastor, Joshua Jacob and Gleb Pogudin. Exact linear reduction for rational dynamical systems.
- Ville Laitinen and Leo Lahti. Probabilistic Multivariate Early Warning Signals.
- Joachim Niehren, Athénaïs Vaginay and Cristian Versari. Abstract Simulation of Reaction Networks via Boolean Networks.
- Samuel Pastva. Variable Stabilisation in Boolean Monotonic Model Pools.
- Clémence Réda and Andrée Delahaye-Duriez. Prioritization of candidate genes through Boolean networks.
- Théo Roncalli and Loïc Paulevé. Variable-Depth Simulation of Most Permissive Boolean Networks
- Honglu Sun, Maxime Folschette and Morgan Magnin. Limit cycle analysis of a class of hybrid gene regulatory networks.
- Van-Giang Trinh, Belaid Benhamou, Kunihiko Hiraishi and Sylvain Soliman. Minimal trap spaces of Logical models are maximal siphons of their Petri net encoding.
Tool papers
- Georgios Argyris, Alberto Lluch Lafuente, Mirco Tribastone, Max Tschaikowski and Andrea Vandin. An Extension of ERODE to Reduce Boolean Networks by Backward Boolean Equivalence.
- Fabricio Cravo, Matthias Függer, Thomas Nowak and Gayathri Prakash. MobsPy: A Meta-Species Language for Chemical Reaction Networks.
- Matej Troják, David Šafránek, Branislav Brozmann and Lubos Brim. eBCSgen 2.0: Modelling and Analysis of Regulated Rule-based Systems.
- Hanna Josephine Wiederanders, Anne-Lena Moor and Christoph Zechner. Automated Generation of Conditional Moment Equations for Stochastic Reaction Networks.
Posters (preliminary list)
- Davide Buzzao, Miguel Castresana-Aguirre, Dimitri Guala and Erik L.L. Sonnhammer. TOPAS, a network-based iterative approach to detect disease modules in a top-down fashion.
- Reinis Muiznieks and Egils Stalidzans. The implementation of Total Optimisation Potential (TOP) approach in the metabolic engineering by COPASI wrapper SpaceScanner.
- Emma Persson and Erik L L Sonnhammer. InParanoid-DIAMOND: Faster orthology analysis with the InParanoid algorithm.
- Deniz Seçilmiş, Thomas Hillerton and Erik Sonnhammer. GRNbenchmark: A web server for online benchmarking of gene regulatory network inference methods.
Highlight talks: TBA
Important dates
- Abstract submission: May 8, 2022
- Paper submission: May 15, 2022
- Notification: June 10, 2022
- Camera ready: June 17, 2022
- Poster/highlight talk: July 14, 2022
- Conference: September 14-16, 2022
Proceedings published in

Sponsored by
- The Faculty of Mathematics and Computer Science, University of Bucharest.
- ICUB, University of Bucharest.