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20th International Conference on Computational Methods in Systems Biology (CMSB 2022)

September 14-16, 2022, Bucharest, Romania

Accepted papers

Regular papers

  • Svitlana Braichenko, Ramon Grima and Guido Sanguinetti. Bayesian learning of effective chemical master equations in crowded intracellular conditions.
  • Aurélien Desoeuvres, Peter Szmolyan and Ovidiu Radulescu. Qualitative dynamics of chemical reaction networks: an investigation using partial tropical equilibrations.
  • Greugny Eléa, Stamatas Georgios and François Fages. Stability versus Metastability in a Model of Skin Microbiome.
  • Martin Helfrich, Milan Ceska, Jan Kretinsky and Štefan Martiček. Abstraction-Based Segmental Simulation of Chemical Reaction Networks.
  • Mathieu Hemery and François Fages. Algebraic Biochemistry: a Framework for On-line Analog Computation in Cells.
  • Antonio Jiménez-Pastor, Joshua Jacob and Gleb Pogudin. Exact linear reduction for rational dynamical systems.
  • Ville Laitinen and Leo Lahti. Probabilistic Multivariate Early Warning Signals.
  • Joachim Niehren, Athénaïs Vaginay and Cristian Versari. Abstract Simulation of Reaction Networks via Boolean Networks.
  • Samuel Pastva. Variable Stabilisation in Boolean Monotonic Model Pools.
  • Clémence Réda and Andrée Delahaye-Duriez. Prioritization of candidate genes through Boolean networks.
  • Théo Roncalli and Loïc Paulevé. Variable-Depth Simulation of Most Permissive Boolean Networks
  • Honglu Sun, Maxime Folschette and Morgan Magnin. Limit cycle analysis of a class of hybrid gene regulatory networks.
  • Van-Giang Trinh, Belaid Benhamou, Kunihiko Hiraishi and Sylvain Soliman. Minimal trap spaces of Logical models are maximal siphons of their Petri net encoding.

Tool papers

  • Georgios Argyris, Alberto Lluch Lafuente, Mirco Tribastone, Max Tschaikowski and Andrea Vandin. An Extension of ERODE to Reduce Boolean Networks by Backward Boolean Equivalence.
  • Fabricio Cravo, Matthias Függer, Thomas Nowak and Gayathri Prakash. MobsPy: A Meta-Species Language for Chemical Reaction Networks.
  • Matej Troják, David Šafránek, Branislav Brozmann and Lubos Brim. eBCSgen 2.0: Modelling and Analysis of Regulated Rule-based Systems.
  • Hanna Josephine Wiederanders, Anne-Lena Moor and Christoph Zechner. Automated Generation of Conditional Moment Equations for Stochastic Reaction Networks.

Posters (preliminary list)

  • Davide Buzzao, Miguel Castresana-Aguirre, Dimitri Guala and Erik L.L. Sonnhammer. TOPAS, a network-based iterative approach to detect disease modules in a top-down fashion.
  • Reinis Muiznieks and Egils Stalidzans. The implementation of Total Optimisation Potential (TOP) approach in the metabolic engineering by COPASI wrapper SpaceScanner.
  • Emma Persson and Erik L L Sonnhammer. InParanoid-DIAMOND: Faster orthology analysis with the InParanoid algorithm.
  • Deniz Seçilmiş, Thomas Hillerton and Erik Sonnhammer. GRNbenchmark: A web server for online benchmarking of gene regulatory network inference methods.

Highlight talks: TBA

Important dates

  • Abstract submission: May 8, 2022
  • Paper submission: May 15, 2022
  • Notification: June 10, 2022
  • Camera ready: June 17, 2022
  • Poster/highlight talk: July 14, 2022
  • Conference: September 14-16, 2022

Proceedings published in

Sponsored by

  • The Faculty of Mathematics and Computer Science, University of Bucharest.
  • ICUB, University of Bucharest.